Call us toll-free

Quick academic help

Don't let the stress of school get you down! Have your essay written by a professional writer before the deadline arrives.

Calculate the price

Pages:

275 Words

$19,50

Enzyme-catalysed synthesis | Nuffield Foundation

DCCD (abbreviation for Dicyclohexylcarbodiimide; also known as DCC, as N,N'-dicyclohexylcarbodiimide, as Bis(cyclohexyl)carbodiimide, and as 1,3-dicyclohexylcarbodiimide) is a small organic molecule thatcan covalently modify protonated carboxyl groups. When added to ATP synthase at pH above 8, DCCD almost exclusively reacts with the carboxyl group of the conserved acidic amino acid residue of subunit (that is why subunit is sometimes called "DCCD-binding protein"). that has elevated pK and can therefore be protonated at such a high pH. Modification of the carboxyl group in a single -subunit is enough to renderthe whole -ring oligomer inactive. Because DCCD covalently binds to -subunit,this inhibition is irreversible.
The carboxyl group of the conserved amino acid residue in subunit -subunit is present inall ATP synthases known so far. So DCCD is a universal inhibitor that can FO function in bacterial, mitochondrial and chloroplast enzymes. Moreover, V- and A-type proton-transporting ATPasesare also sensitive to DCCD for the same reason. Sodium-transporting ATP synthases are also effectively inhibited by DCCD.
At lower pH (1 and inactivates it. So this compound canbe considered as an inhibitor of both FO and F1. However, inhibition of FOis highly specific, well-defined, and requires much lower DCCD concentration so usually thisinhibitor is used as FO-specific.

De novo synthesis the formation of an essential molecule from simple precursor molecules

To make a long story short, the primary function of ATP synthase in most organisms is ATP synthesis. Hence the name. However, in some cases the reverse reaction, i.e. transmembrane proton pumpingpowered by ATP hydrolysis is more important. A typical example: anaerobic bacteria produce ATP byfermentation, and ATP synthase uses ATP to generate protonmotive force necessary for ion transportand flagella motility.
Many bacteria can live both from fermentation and respiration or photosynthesis. In such case ATP synthasefunctions in both ways.
An important issue is to control ATP-driven proton pumping activity of ATP synthase in order to avoid wasteful ATP hydrolysis under conditions when no protonmotive force can be generated (e.g. leakydamaged membrane, uncoupler present, etc.). In such case ATP hydrolysis becomes a problem,because it can quickly exchaust the intecellular ATP pool. To avoid this situation,all ATP synthases are equipped with regulatory mechanisms that suppress the ATPaseactivity if no protonmotive force is present. The degree of ATP hydrolysis inhibitiondepend on the organism. In plants (in chloroplasts), where it is necessary to preserveATP pool through the whole night, the inhibition is very strong: the enzyme hardly has anyATPase activity. In contrast, in anaerobic bacteria where ATP synhase is the maingenerator of protonmotive force, such inhibition is very weak. Mitochondrial ATP synthase is somewhereinbetween.

Protein Synthesis/enzymes Flashcards | Quizlet

This enzyme-catalysed synthesis offers an alternative enzyme reaction resulting in building up a new molecule

This definition does not excude the possibility of other effect or side effect of the distomer (See also ).Docking studies are molecular modeling studies aiming at finding a proper fit between a ligand and its binding site.A is a clinical study of potential and marketed , where neither the investigators nor the subjects know which subjects will be treated with the active principle and which ones will receive a placebo.A double prodrug is a biologically inactive molecule which is transformed in two steps (enzymatically and/or chemically) to the active species.A drug is any substance presented for treating, curing or preventing disease in human beings or in animals.

The term congener, while most often a synonym for homologue, has become somewhat more diffuse in meaning so that the terms congener and analog are frequently used interchangeably in the literature.Cooperativity is the interaction process by which binding of a ligand to one site on a macromolecule (, , etc.) influences binding at a second site, e.g.

Protein Synthesis (Quiz 4) How is ..

ATP synthase is an enzyme that creates the energy storage molecule adenosine triphosphate (ATP)

Substrate molecules are transformed at the same site (regioselectivity) and only one or preferentially one of chiral a substrate or of a racemate is transformed (enantioselectivity[special form of stereoselectivity]).Enzyme induction is the process whereby an (inducible) is synthesized in response to a specific inducer molecule.

The inducer molecule (often a substrate that needs the catalytic activity of the inducible enzyme for its ) combines with a repressor and thereby prevents the blocking of an operator by the repressor leading to the translation of the gene for the enzyme.Enzyme repression is the mode by which the synthesis of an is prevented by repressor molecules.In many cases, the end product of a synthesis chain (e.g., an amino acid) acts as a feed-back corepressor by combining with an intracellular aporepressor protein, so that this complex is able to block the function of an operator.

DNA replication is initiated when helicase enzyme breaks the hydrogen bonds ..
Order now
  • UNMATCHED QUALITY

    As soon as we have completed your work, it will be proofread and given a thorough scan for plagiarism.

  • STRICT PRIVACY

    Our clients' personal information is kept confidential, so rest assured that no one will find out about our cooperation.

  • COMPLETE ORIGINALITY

    We write everything from scratch. You'll be sure to receive a plagiarism-free paper every time you place an order.

  • ON-TIME DELIVERY

    We will complete your paper on time, giving you total peace of mind with every assignment you entrust us with.

  • FREE CORRECTIONS

    Want something changed in your paper? Request as many revisions as you want until you're completely satisfied with the outcome.

  • 24/7 SUPPORT

    We're always here to help you solve any possible issue. Feel free to give us a call or write a message in chat.

Order now

RNA is acting as an enzyme that catalyzes the reactions that form ..

The catalytic mechanism of ATP synthasemost probably involves rotation of Gamma subunit together with subunitEpsilon and -subunitoligomer relative to the rest of the enzyme. Such rotation wasexperimentally shown for ATP hydrolysis uncoupled to protontranslocation. Moreover, recent experiments revealed, that if Gammasubunit is mechanically forced into rotation, ATP synthesis takes placeeven without proton-translocating FO-portion.
It seems most probable that such rotation takes place . However, there is nodirect experimental evidence for such rotary mechanism in the intactenzyme under physiological conditions.
The proposed mechanism is the following:

Chemistry for Biologists: Respiration

ATP synthesis catalyzed by ATP synthase is powered bythe transmembrane electrochemical proton potential difference, composed of twocomponents: the chemical and theelectrical one. The more protons are on one side of a membrane relativetothe other, the higher is the driving force for a proton to cross themembrane. As proton is a charged particle, its movement is alsoinfluenced by electrical field: transmembrane electrical potentialdifference will drive protons from positively charged side tothe negatively charged one. A water mill is a good analogy: the difference between the water levelsbefore and after the dam provides potential energy; downhill water flowrotates thewheel; the rotation is used to perform some work (ATP synthesis in ourcase). Quantitatively is measured in Joules per mole (J mol-1) and isdefined as:
where the "" and "" indices denote the ositively and the egatively charged sides of thecoupling membrane; is Faraday constant(96 485 C mol-1); is the molar gas constant(8.314 J mol-1K-1), is the temperature in Kelvins, and is thetransmembrane electrical potential difference involts. The value of tells, how much energy is required (or is released, depending on thedirection of the transmembrane proton flow) to move 1 mol of protonsacross the membrane.
It is often more convenient to use not , but protonmotive force ():

At room temperature (25oC) the protonmotive force (inmillivolts, as well as )is:
In the absence of transmembrane pH difference equals the transmembraneelectrical potential difference and can be directly measured by severalexperimental techniques (i.e. permeate ion distribution,potential-sensitive dyes, electrochromic carotenoid bandshift, etc.).Each pH unit of the transmembrane pH gradient corresponds to 59 mVof .
For most biological membranes engaged in ATP synthesis the value lies between 120 and 200mV ( between 11.6 and19.3 kJ mol-1).
The catalytic mechanism of ATP synthasemost probably involves rotation of Gamma subunit together with subunitEpsilon and -subunitoligomer relative to the rest of the enzyme. Such rotation wasexperimentally shown for ATP hydrolysis uncoupled to protontranslocation. Moreover, recent experiments revealed, that if Gammasubunit is mechanically forced into rotation, ATP synthesis takes placeeven without proton-translocating FO-portion.
It seems most probable that such rotation takes place . However, there is nodirect experimental evidence for such rotary mechanism in the intactenzyme under physiological conditions.
The proposed mechanism is the following:
ATP synthase activity is specifically inhibited by several compounds(both organic and inorganic). Most of these inhibitors are very toxic, so great careand appropriate safety precautions are essential when working with them (it is not very surprising thatwe get unhappy when OUR ATP synthase is blocked!).Most inhibitors are specific for either proton-translocating FO-portion, or hydrophilicF1-portion, so the section below is divided accordingly. Oligomycin is the inhibitor that gave the name "FO" to the membrane-embedded portion of ATP synthase. The subscript letter "O" in FO(not zero!) comes from Oligomycin sensitivity of this hydrophobicphosphorylation Factor in mitochondria.
Oligomycin binds on theinterface of subunit and -ring oligomer and blocks the rotary proton translocation in FO. If the enzyme is well-coupled, the activity of F1is also blocked. Because of the latter phenomenon, a subunit of mitochondrial F1-portionthat connects F1 with FO was named Oligomycin-Sensitivity Conferring Protein (OSCP).This subunit is essential for good coupling between F1 and FO and makes the ATPase activity of F1 sensitive to FO inhibitor oligomycin, hence the name.
Oligomycin is specific for mitochondrial ATP synthase and in micromolar concentrationseffectively blocks proton transport through FO. This inhibitor also works in some bacterial enzymes that show highsimilarity to mitochondrial ATP synthase, e.g. enzyme from purple bacterium . But ATP synthase from chloroplasts and from most bacteria (including )has low sensitivity to oligomycin.
It should also be noted that oligomycin in high concentrations also affects the activity of mitochondrial F1. DCCD (abbreviation for Dicyclohexylcarbodiimide; also known as DCC, as N,N'-dicyclohexylcarbodiimide, as Bis(cyclohexyl)carbodiimide, and as 1,3-dicyclohexylcarbodiimide) is a small organic molecule thatcan covalently modify protonated carboxyl groups. When added to ATP synthase at pH above 8, DCCD almost exclusively reacts with the carboxyl group of the conserved acidic amino acid residue of subunit (that is why subunit is sometimes called "DCCD-binding protein"). that has elevated pK and can therefore be protonated at such a high pH. Modification of the carboxyl group in a single -subunit is enough to renderthe whole -ring oligomer inactive. Because DCCD covalently binds to -subunit,this inhibition is irreversible.
The carboxyl group of the conserved amino acid residue in subunit -subunit is present inall ATP synthases known so far. So DCCD is a universal inhibitor that can FO function in bacterial, mitochondrial and chloroplast enzymes. Moreover, V- and A-type proton-transporting ATPasesare also sensitive to DCCD for the same reason. Sodium-transporting ATP synthases are also effectively inhibited by DCCD.
At lower pH (1 and inactivates it. So this compound canbe considered as an inhibitor of both FO and F1. However, inhibition of FOis highly specific, well-defined, and requires much lower DCCD concentration so usually thisinhibitor is used as FO-specific.

Respiration What is respiration

Sometimes, "clone" is also used for a number of recombinant DNA (deoxyribonucleic acid) molecules all carrying the same inserted sequence.A codon is the sequence of three consecutive that occurs in mRNA which directs the incorporation of a specific amino acid into a protein or represents the starting or termination signals of protein synthesis.A coenzyme is a dissociable, low-molecular weight, non-proteinaceous organic compound (often ) participating in enzymatic reactions as acceptor or donor of chemical groups or electrons.Combinatorial synthesis is a process to prepare large sets of organic compounds by combining sets of building blocks.A combinatorial library is a set of compounds prepared by combinatorial synthesis.See .Comparative molecular field analysis (CoMFA) is a 3D-QSAR method that uses statistical correlation techniques for the analysis of the quantitative relationship between the biological activity of a set of compounds with a specified alignment, and their three-dimensional electronic and steric properties.

Order now
  • You submit your order instructions

  • We assign an appropriate expert

  • The expert takes care of your task

  • We send it to you upon completion

Order now
  • 37 684

    Delivered orders

  • 763

    Professional writers

  • 311

    Writers online

  • 4.8/5

    Average quality score

Order now
  • Kim

    "I have always been impressed by the quick turnaround and your thoroughness. Easily the most professional essay writing service on the web."

  • Paul

    "Your assistance and the first class service is much appreciated. My essay reads so well and without your help I'm sure I would have been marked down again on grammar and syntax."

  • Ellen

    "Thanks again for your excellent work with my assignments. No doubts you're true experts at what you do and very approachable."

  • Joyce

    "Very professional, cheap and friendly service. Thanks for writing two important essays for me, I wouldn't have written it myself because of the tight deadline."

  • Albert

    "Thanks for your cautious eye, attention to detail and overall superb service. Thanks to you, now I am confident that I can submit my term paper on time."

  • Mary

    "Thank you for the GREAT work you have done. Just wanted to tell that I'm very happy with my essay and will get back with more assignments soon."

Ready to tackle your homework?

Place an order